Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs12404208 chr1:3208323 G/A 2.06E-10 175 12.9 18.47 3.22 KM Plot
ESCA rs12405511 chr1:3209226 C/T 1.29E-10 178 12.85 17.87 3.22 KM Plot
ESCA rs12405692 chr1:3208555 A/G 1.29E-10 178 12.85 17.87 3.22 KM Plot
ESCA rs12495703 chr3:124644588 G/C 0.000104 175 13.03 18.53 4.87 KM Plot
ESCA rs12563431 chr1:247153573 A/T 1.73E-7 176 3.87 20.3 13.03 KM Plot
ESCA rs12615424 chr2:235231115 A/T 7.67E-5 181 13.38 13 4.05 KM Plot
ESCA rs12700747 chr7:26599690 A/T 3.37E-5 184 4.48 23.25 13.07 KM Plot
ESCA rs12702400 chr7:47978073 A/G 1.13E-5 180 13.37 13.1 1.53 KM Plot
ESCA rs12740374 chr1:109817590 G/T 0.000103 177 12.93 16.62 6.5 KM Plot
ESCA rs12761407 chr10:126720951 G/A 3.63E-5 183 13.38 10.53 7.87 KM Plot
ESCA rs12851 chr16:30016977 C/T 6.68E-8 184 3.6 15.9 13.03 KM Plot
ESCA rs12918742 chr16:86524157 T/A 1.51E-5 180 13.4 8.92 27.47 KM Plot
ESCA rs12921745 chr16:1505558 G/A 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs12923519 chr16:1505980 C/T 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs12926089 chr16:1502857 C/T 1.49E-7 180 13.03 13.73 4 KM Plot